Stem-loop ccr-mir-301a

Accession

MI0023388

Description

Cyprinus carpio ccr-mir-301a precursor miRNA

Literature search

1 open access papers mention ccr-mir-301a
(3 sentences)

Sequence

115084 reads, 460.0 reads per million, 32 experiments

acaucaagugcuguuaacagguGCUCUGACUUCAUUGCACUACUguauuggacagcuagCAGUGCAAUAGUAUUGUCAAAGCaucugagagcagc
.........((((((..((((((((.((((..(((((((((.((((........)).)).)))))))).)....)))).))))))))..))))))

Structure

acaucaagu      aa        C    --UU -        A  -  auu 
         gcuguu  cagguGCU UGAC    C AUUGCACU CU gu   g
         ||||||  |||||||| ||||    | |||||||| || ||    
         cgacga  gucuaCGA ACUG    G UAACGUGA ga cg   g
---------      ga        A    UUAU A        C  u  aca 

Annotation confidence High

Genome context

Unknown

Mature ccr-miR-301a-5p

• Accession: MIMAT0058326
• Description: Cyprinus carpio ccr-miR-301a-5p mature miRNA
• Sequence: 23 - GCUCUGACUUCAUUGCACUACU - 44
• Evidence: experimental ; Illumina [1]

Mature ccr-miR-301a-3p

• Accession: MIMAT0026288
• Description: Cyprinus carpio ccr-miR-301a-3p mature miRNA
• Sequence: 60 - CAGUGCAAUAGUAUUGUCAAAGC - 82
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22303472
   Identification and profiling of microRNAs from skeletal muscle of the common carp
   Yan X, Ding L, Li Y, Zhang X, Liang Y, Sun X, Teng CB
   PLoS One (2012) 7:e30925