Stem-loop ccr-mir-30d

Accession

MI0023390

Description

Cyprinus carpio ccr-mir-30d precursor miRNA

Literature search

3 open access papers mention ccr-mir-30d
(9 sentences)

Sequence

1088381 reads, 4887.0 reads per million, 33 experiments

uucaugugcugguuguucaugccUGUAAACAUCCCCGACUGGAAGCugugcuguacgcaaaacaagCUUUCAGUUGGAUGUUUGCUGCcaucguccaguucuuucg
.....(.(((((.((.....((..((((((((((..(((((((((((((..((....))..)).))))))))))))))))))))).))...)).))))).).....

Structure

uucau u     u  uucau  cU          CC           -  gc  u 
     g gcugg ug     gc  GUAAACAUCC  GACUGGAAGCu gu  ug a
     | ||||| ||     ||  ||||||||||  ||||||||||| ||  ||  
     c ugacc gc     CG  CGUUUGUAGG  UUGACUUUCga ca  ac c
gcuuu u     u  --uac  -U          --           a  aa  g 

Annotation confidence High

Genome context

Unknown

Mature ccr-miR-30d-5p

• Accession: MIMAT0026290
• Description: Cyprinus carpio ccr-miR-30d-5p mature miRNA
• Sequence: 24 - UGUAAACAUCCCCGACUGGAAGC - 46
• Evidence: experimental ; Illumina [1]

Mature ccr-miR-30d-3p

• Accession: MIMAT0058328
• Description: Cyprinus carpio ccr-miR-30d-3p mature miRNA
• Sequence: 67 - CUUUCAGUUGGAUGUUUGCUGC - 88
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22303472
   Identification and profiling of microRNAs from skeletal muscle of the common carp
   Yan X, Ding L, Li Y, Zhang X, Liang Y, Sun X, Teng CB
   PLoS One (2012) 7:e30925