Stem-loop ccr-mir-338

Accession

MI0023391

Description

Cyprinus carpio ccr-mir-338 precursor miRNA

Sequence

250631 reads, 967.0 reads per million, 31 experiments

ugggAACAAUAUCCUGAUGCUGAAUgaguguguuuuguaaaacUCCAGCAUCAGUGAUUUUGUUGcca
(((.(((((.((((((((((((...((((............))))))))))))).))).))))).)))

Structure

   g     U   -         AAU    guguu 
ugg AACAA AUC CUGAUGCUG   gagu     u
||| ||||| ||| |||||||||   ||||      
acc UUGUU UAG GACUACGAC   CUca     u
   G     U   U         ---    aaaug 

Annotation confidence High

Genome context

Unknown

Mature ccr-miR-338-5p

• Accession: MIMAT0058329
• Description: Cyprinus carpio ccr-miR-338-5p mature miRNA
• Sequence: 5 - AACAAUAUCCUGAUGCUGAAU - 25
• Evidence: experimental ; Illumina [1]

Mature ccr-miR-338-3p

• Accession: MIMAT0026291
• Description: Cyprinus carpio ccr-miR-338-3p mature miRNA
• Sequence: 44 - UCCAGCAUCAGUGAUUUUGUUG - 65
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22303472
   Identification and profiling of microRNAs from skeletal muscle of the common carp
   Yan X, Ding L, Li Y, Zhang X, Liang Y, Sun X, Teng CB
   PLoS One (2012) 7:e30925