Stem-loop ccr-mir-489

Accession

MI0023406

Description

Cyprinus carpio ccr-mir-489 precursor miRNA

Sequence

4400 reads, 28.0 reads per million, 23 experiments

ggugguggccuggUGGUCGUAUGUAUGACGUCAUUUacuucaaaguuuggagUGACAUCAUAUGUACGGCUGCUaaacugcuac
.(((((((..((((((((((((((((((.((((((((((....)))...))))))).))))))))))))))))))..)))))))

Structure

g       cc                  C       ---   u 
 guggugg  uggUGGUCGUAUGUAUGA GUCAUUU   acu c
 |||||||  |||||||||||||||||| |||||||   |||  
 caucguc  aUCGUCGGCAUGUAUACU CAGUgag   uga a
-       aa                  A       guu   a 

Annotation confidence High

Genome context

Unknown

Mature ccr-miR-489-5p

• Accession: MIMAT0058341
• Description: Cyprinus carpio ccr-miR-489-5p mature miRNA
• Sequence: 14 - UGGUCGUAUGUAUGACGUCAUUU - 36
• Evidence: experimental ; Illumina [1]

Mature ccr-miR-489-3p

• Accession: MIMAT0026308
• Description: Cyprinus carpio ccr-miR-489-3p mature miRNA
• Sequence: 53 - UGACAUCAUAUGUACGGCUGCU - 74
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22303472
   Identification and profiling of microRNAs from skeletal muscle of the common carp
   Yan X, Ding L, Li Y, Zhang X, Liang Y, Sun X, Teng CB
   PLoS One (2012) 7:e30925