Stem-loop ccr-mir-9

Accession

MI0023418

Description

Cyprinus carpio ccr-mir-9 precursor miRNA

Literature search

3 open access papers mention ccr-mir-9
(6 sentences)

Sequence

1169859 reads, 6694.0 reads per million, 33 experiments

ggagggguuggcuguuaUCUUUGGUUAUCUAGCUGUAUGAguguuauucauucuucaUAAAGCUAGAUAACCGAAAGUAacaagaauccc
...((((((...((((((.(((((((((((((((.((((((((.....)))...))))).))))))))))))))).))))))..))))))

Structure

gga      ggc      C               G     ---   u 
   gggguu   uguuaU UUUGGUUAUCUAGCU UAUGA   gug u
   ||||||   |||||| ||||||||||||||| |||||   ||| a
   cccuaa   acaAUG AAGCCAAUAGAUCGA AUacu   uac u
---      -ga      A               A     ucu   u 

Annotation confidence High

Genome context

Unknown

Mature ccr-miR-9-5p

• Accession: MIMAT0026322
• Description: Cyprinus carpio ccr-miR-9-5p mature miRNA
• Sequence: 18 - UCUUUGGUUAUCUAGCUGUAUGA - 40
• Evidence: experimental ; Illumina [1]

Mature ccr-miR-9-3p

• Accession: MIMAT0026321
• Description: Cyprinus carpio ccr-miR-9-3p mature miRNA
• Sequence: 58 - UAAAGCUAGAUAACCGAAAGUA - 79
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22303472
   Identification and profiling of microRNAs from skeletal muscle of the common carp
   Yan X, Ding L, Li Y, Zhang X, Liang Y, Sun X, Teng CB
   PLoS One (2012) 7:e30925