Stem-loop ccr-mir-96

Accession

MI0023422

Description

Cyprinus carpio ccr-mir-96 precursor miRNA

Literature search

1 open access papers mention ccr-mir-96
(1 sentences)

Sequence

151859 reads, 960.0 reads per million, 33 experiments

cucuucuuugccuguUUUGGCACUAGCACAUUUUUGCUuuuuuauauauacgcugagCAAUCAUGUGUAGUGCCAAUAUGGgacaagacagaaau
.(((((((..(((((.(((((((((.(((((..((((((...............))))))..)))))))))))))).)))))..)))).)))...

Structure

--c   -    ug     U         G     UU      uuuuau 
   ucu ucuu  ccugu UUGGCACUA CACAU  UUGCUu      a
   ||| ||||  ||||| ||||||||| |||||  ||||||      u
   aga agaa  gGGUA AACCGUGAU GUGUA  AACgag      a
uaa   c    ca     U         -     CU      ucgcau 

Annotation confidence High

Genome context

Unknown

Mature ccr-miR-96-5p

• Accession: MIMAT0026326
• Description: Cyprinus carpio ccr-miR-96-5p mature miRNA
• Sequence: 16 - UUUGGCACUAGCACAUUUUUGCU - 38
• Evidence: experimental ; Illumina [1]

Mature ccr-miR-96-3p

• Accession: MIMAT0058355
• Description: Cyprinus carpio ccr-miR-96-3p mature miRNA
• Sequence: 58 - CAAUCAUGUGUAGUGCCAAUAUGG - 81
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22303472
   Identification and profiling of microRNAs from skeletal muscle of the common carp
   Yan X, Ding L, Li Y, Zhang X, Liang Y, Sun X, Teng CB
   PLoS One (2012) 7:e30925