miRBase entry: bma-mir-5839

Stem-loop bma-mir-5839

Accession

MI0023434

Description

Brugia malayi bma-mir-5839 precursor miRNA

Literature search

1 open access papers mention bma-mir-5839
(2 sentences)

Sequence

gugauaauuaacugcaaccaaaAGGAGUAAUAUUCUAACGUUGAGCaaaaauauacaaugCUUCGUAGAUUAUUACUCCCAAuggaagcagugagauagcaguau
((........(((((..(((...(((((((((.((((.((..(((((...........))))))))))).)))))))))...)))..)))))......)).....

Structure

-----  gauaauua     aa   aaA         U    A  UU     aaaa 
     gu        acugc  cca   GGAGUAAUA UCUA CG  GAGCa    u
     ||        |||||  |||   ||||||||| |||| ||  |||||    a
     cg        ugacg  ggu   CCUCAUUAU AGAU GC  UUCgu    u
uauga  --auagag     aa   AAC         U    -  --     aaca

Annotation confidence Not enough data

Do you think this miRNA is real?

Comments

This microRNA was experimentally validated from deep sequencing libraries in the closely related species Brugia pahangi [1].

Genome context

Bmal_v3_scaffold153: 22289-22393 [+]

Clustered miRNAs

6 other miRNAs are < 10 kb from bma-mir-5839

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature bma-miR-5839-3p

Accession	MIMAT0026337
Description	Brugia malayi bma-miR-5839-3p mature miRNA
Sequence	61 - CUUCGUAGAUUAUUACUCCCAA - 82
Evidence	not_experimental

Mature bma-miR-5839-5p

Accession	MIMAT0037477
Description	Brugia malayi bma-miR-5839-5p mature miRNA
Sequence	23 - AGGAGUAAUAUUCUAACGUUGAGC - 46
Evidence	experimental Illumina [2]

References

PubMed ID: 22216965
Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
BMC Genomics (2012) 13:4

PubMed ID: 24824352
Diversity and expression of microRNAs in the filarial parasite, Brugia malayi
Poole CB, Gu W, Kumar S, Jin J, Davis PJ, Bauche D, McReynolds LA
PLoS One (2014) 9:e96498