Stem-loop bma-mir-5843

Accession

MI0023439

Description

Brugia malayi bma-mir-5843 precursor miRNA

Sequence

57945 reads, 835.0 reads per million, 24 experiments

ucacagagaauggugcguuuaucAUGAGCAACUUUGCCUUCGUUGAggguaauugacaucAACUUGGCUCUGCUGCUCAAGAugacggugcccuucacuuccucu
.......(((.(((((..(((((.((((((.(...(((...(((((.(........).)))))..)))...).)))))).)))))..))))).))).........

Structure

--ucacaga   u     gu     A      A UUU   UUC     g gua 
         gaa ggugc  uuauc UGAGCA C   GCC   GUUGA g   a
         ||| |||||  ||||| |||||| |   |||   ||||| |    
         cuu ccgug  aguAG ACUCGU G   CGG   CAAcu c   u
ucuccuuca   c     gc     A      C UCU   -UU     a agu 

Annotation confidence High

Comments

This microRNA was experimentally validated from deep sequencing libraries in the closely related species Brugia pahangi [1].

Genome context

Bmal_v3_scaffold3: 1001859-1001963 [-]

Mature bma-miR-5843-5p

• Accession: MIMAT0026341
• Description: Brugia malayi bma-miR-5843-5p mature miRNA
• Sequence: 24 - AUGAGCAACUUUGCCUUCGUUGA - 46
• Evidence: experimental ; Illumina [2]

Mature bma-miR-5843-3p

• Accession: MIMAT0057222
• Description: Brugia malayi bma-miR-5843-3p mature miRNA
• Sequence: 61 - AACUUGGCUCUGCUGCUCAAGA - 82
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4


2. PubMed ID: 24824352
   Diversity and expression of microRNAs in the filarial parasite, Brugia malayi
   Poole CB, Gu W, Kumar S, Jin J, Davis PJ, Bauche D, McReynolds LA
   PLoS One (2014) 9:e96498