Stem-loop bma-mir-5847-1

Accession

MI0023443

Description

Brugia malayi bma-mir-5847-1 precursor miRNA

Sequence

5030 reads, 299.0 reads per million, 19 experiments

aauuuccggaaACAACCCAACUAUUUUGCAGUCuuucuggugugaCUGCAAAUUAUUUGGGUUGCUUcuggucauua
(((..((((((.((((((((.((.(((((((((..........))))))))).)).)))))))).))))))..))).

Structure

-   uu      A        C  U         uuuc 
 aau  ccggaa CAACCCAA UA UUUGCAGUC    u
 |||  |||||| |||||||| || |||||||||     
 uua  ggucUU GUUGGGUU AU AAACGUCag    g
a   cu      C        U  U         ugug 

Annotation confidence High

Comments

This microRNA was experimentally validated from deep sequencing libraries in the closely related species Brugia pahangi [1].

Genome context

Bmal_v3_scaffold66: 112703-112779 [+]

Mature bma-miR-5847-5p

• Accession: MIMAT0026345
• Description: Brugia malayi bma-miR-5847-5p mature miRNA
• Sequence: 12 - ACAACCCAACUAUUUUGCAGUC - 33
• Evidence: experimental ; Illumina [2]

Mature bma-miR-5847-3p

• Accession: MIMAT0057223
• Description: Brugia malayi bma-miR-5847-3p mature miRNA
• Sequence: 46 - CUGCAAAUUAUUUGGGUUGCUU - 67
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4


2. PubMed ID: 24824352
   Diversity and expression of microRNAs in the filarial parasite, Brugia malayi
   Poole CB, Gu W, Kumar S, Jin J, Davis PJ, Bauche D, McReynolds LA
   PLoS One (2014) 9:e96498