Stem-loop bma-mir-5849

Accession

MI0023447

Description

Brugia malayi bma-mir-5849 precursor miRNA

Sequence

3465 reads, 805.0 reads per million, 25 experiments

gauaacguggUGAAUGAUCUUGUUUUAACUGAAgugaugaguaccagUUAGAACAACAUCAUUUACAAUguuaucaguugu
((((((((.(((((((((.((((((((((((..(((.....))))))))))))))).))))))))).))))))))......

Structure

------        g         C            AA   a 
      gauaacgu gUGAAUGAU UUGUUUUAACUG  gug u
      |||||||| ||||||||| ||||||||||||  ||| g
      cuauugUA CAUUUACUA AACAAGAUUgac  cau a
uguuga        A         C            --   g 

Annotation confidence High

Comments

This microRNA was experimentally validated from deep sequencing libraries in the closely related species Brugia pahangi [1].

Genome context

Bmal_v3_scaffold72: 61794-61874 [-]

Mature bma-miR-5849-5p

• Accession: MIMAT0026347
• Description: Brugia malayi bma-miR-5849-5p mature miRNA
• Sequence: 11 - UGAAUGAUCUUGUUUUAACUGAA - 33
• Evidence: experimental ; Illumina [2]

Mature bma-miR-5849-3p

• Accession: MIMAT0057224
• Description: Brugia malayi bma-miR-5849-3p mature miRNA
• Sequence: 48 - UUAGAACAACAUCAUUUACAAU - 69
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4


2. PubMed ID: 24824352
   Diversity and expression of microRNAs in the filarial parasite, Brugia malayi
   Poole CB, Gu W, Kumar S, Jin J, Davis PJ, Bauche D, McReynolds LA
   PLoS One (2014) 9:e96498