Stem-loop bma-mir-5853

Accession

MI0023451

Description

Brugia malayi bma-mir-5853 precursor miRNA

Sequence

auggcgagauGAUGGUAUUGGUGAUGCAGGUGGaaauggcgcuuauggugcaccugcagcagcgguuccauuuucguguuuaug
..((((.((.(((((.((((.((.(((((((.......(((((...)))))))))))).)).)))).))))).)).))))....

Structure

--au    a  u     U    G  A       GGaaaug     u 
    ggcg ga GAUGG AUUG UG UGCAGGU       gcgcu  
    |||| || ||||| |||| || |||||||       ||||| a
    uugu cu uuacc uggc ac acgucca       cgugg  
guau    g  u     u    g  g       -------     u 

Annotation confidence Low

Comments

This microRNA was experimentally validated from deep sequencing libraries in the closely related species Brugia pahangi [1].

Genome context

Bmal_v3_scaffold17: 209383-209466 [-]

Mature bma-miR-5853

• Accession: MIMAT0026351
• Description: Brugia malayi bma-miR-5853 mature miRNA
• Sequence: 11 - GAUGGUAUUGGUGAUGCAGGUGG - 33
• Evidence: not_experimental

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4