Stem-loop bma-mir-5856b

Accession

MI0023455

Description

Brugia malayi bma-mir-5856b precursor miRNA

Sequence

650 reads, 29.0 reads per million, 15 experiments

aucaagaagcAACUCCGUGUGUAGCAUUCGGUaugagaguguauaCCGAAUGCUACACACAGAGUUgcuucuauua
....(((((((((((.(((((((((((((((((((......))))))))))))))))))).)))))))))))....

Structure

auca           C                   ag 
    agaagcAACUC GUGUGUAGCAUUCGGUaug  a
    ||||||||||| |||||||||||||||||||   
    ucuucgUUGAG CACACAUCGUAAGCCauau  g
auua           A                   gu 

Annotation confidence Medium

Comments

This microRNA was experimentally validated from deep sequencing libraries in the closely related species Brugia pahangi [1].

Genome context

Bmal_v3_scaffold2: 198266-198341 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from bma-mir-5856b

Mature bma-miR-5856b-5p

• Accession: MIMAT0026355
• Description: Brugia malayi bma-miR-5856b-5p mature miRNA
• Sequence: 11 - AACUCCGUGUGUAGCAUUCGGU - 32
• Evidence: experimental ; Illumina [2]

Mature bma-miR-5856b-3p

• Accession: MIMAT0057226
• Description: Brugia malayi bma-miR-5856b-3p mature miRNA
• Sequence: 46 - CCGAAUGCUACACACAGAGUU - 66
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4


2. PubMed ID: 24824352
   Diversity and expression of microRNAs in the filarial parasite, Brugia malayi
   Poole CB, Gu W, Kumar S, Jin J, Davis PJ, Bauche D, McReynolds LA
   PLoS One (2014) 9:e96498