miRBase entry: bma-mir-5856b

Stem-loop bma-mir-5856b

Accession

MI0023455

Description

Brugia malayi bma-mir-5856b precursor miRNA

Sequence

aucaagaagcAACUCCGUGUGUAGCAUUCGGUaugagaguguauaccgaaugcuacacacagaguugcuucuauua
....(((((((((((.(((((((((((((((((((......))))))))))))))))))).)))))))))))....

Structure

auca           C                   ag 
    agaagcAACUC GUGUGUAGCAUUCGGUaug  a
    ||||||||||| |||||||||||||||||||   
    ucuucguugag cacacaucguaagccauau  g
auua           a                   gu

Annotation confidence Not enough data

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Comments

This microRNA was experimentally validated from deep sequencing libraries in the closely related species Brugia pahangi [1].

Genome context

Bmal_v3_scaffold2: 198266-198341 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from bma-mir-5856b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature bma-miR-5856b

Accession	MIMAT0026355
Description	Brugia malayi bma-miR-5856b mature miRNA
Sequence	11 - AACUCCGUGUGUAGCAUUCGGU - 32
Evidence	experimental Illumina [2]

References

PubMed ID: 22216965
Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
BMC Genomics (2012) 13:4

PubMed ID: 24824352
Diversity and expression of microRNAs in the filarial parasite, Brugia malayi
Poole CB, Gu W, Kumar S, Jin J, Davis PJ, Bauche D, McReynolds LA
PLoS One (2014) 9:e96498