Stem-loop bma-mir-5858

Accession

MI0023457

Description

Brugia malayi bma-mir-5858 precursor miRNA

Sequence

128650 reads, 5666.0 reads per million, 8 experiments

cugcgaacagaaAAUCGCUUUGGAUUAGGAAGuugguagacaaaagUUCCUAAGCUAAAUCGAUUUUcuguugcaa
.(((.((((((((((((.(((((.(((((((.((.........)).))))))).))))).))))))))))))))).

Structure

c   g            C     A       G  ggu 
 ugc aacagaaAAUCG UUUGG UUAGGAA uu   a
 ||| |||||||||||| ||||| ||||||| ||   g
 acg uugucUUUUAGC AAAUC AAUCCUU aa   a
a   -            U     G       g  aac 

Annotation confidence High

Comments

This microRNA was experimentally validated from deep sequencing libraries in the closely related species Brugia pahangi [1].

Genome context

Bmal_v3_scaffold5: 2094851-2094926 [+]

Mature bma-miR-5858-5p

• Accession: MIMAT0026357
• Description: Brugia malayi bma-miR-5858-5p mature miRNA
• Sequence: 13 - AAUCGCUUUGGAUUAGGAAG - 32
• Evidence: not_experimental

Mature bma-miR-5858-3p

• Accession: MIMAT0037481
• Description: Brugia malayi bma-miR-5858-3p mature miRNA
• Sequence: 47 - UUCCUAAGCUAAAUCGAUUUU - 67
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4


2. PubMed ID: 24824352
   Diversity and expression of microRNAs in the filarial parasite, Brugia malayi
   Poole CB, Gu W, Kumar S, Jin J, Davis PJ, Bauche D, McReynolds LA
   PLoS One (2014) 9:e96498