Stem-loop bma-mir-5861

Accession

MI0023460

Description

Brugia malayi bma-mir-5861 precursor miRNA

Sequence

375 reads, 103.0 reads per million, 21 experiments

cgaugggaaguuaagugaguauUUUGGCUUUCUUUGAUAUGAAUGuaacgauuuaauaucaUAAUAUCAUACGAAAGCUGAAGAuacuuucucuucuugcuguauc
..((((.(((...((.((((((((((((((((..((((((..(((..............))).))))))...))))))).))))))))).))...))).))))...

Structure

-cg    g   uua  u         -       -UU      GA   uaacga 
   augg aag   ag gaguauUUU GGCUUUC   UGAUAU  AUG      u
   |||| |||   || ||||||||| |||||||   ||||||  |||       
   uguc uuc   uc uucauAGAA UCGAAAG   ACUAUA  Uac      u
cua    g   uuc  u         G       CAU      -A   uauaau 

Annotation confidence High

Comments

This microRNA was experimentally validated from deep sequencing libraries in the closely related species Brugia pahangi [1].

Genome context

Bmal_v3_scaffold1: 1339213-1339318 [+]

Mature bma-miR-5861-5p

• Accession: MIMAT0057227
• Description: Brugia malayi bma-miR-5861-5p mature miRNA
• Sequence: 23 - UUUGGCUUUCUUUGAUAUGAAUG - 45
• Evidence: experimental ; Illumina [2]

Mature bma-miR-5861-3p

• Accession: MIMAT0026360
• Description: Brugia malayi bma-miR-5861-3p mature miRNA
• Sequence: 62 - UAAUAUCAUACGAAAGCUGAAGA - 84
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4


2. PubMed ID: 24824352
   Diversity and expression of microRNAs in the filarial parasite, Brugia malayi
   Poole CB, Gu W, Kumar S, Jin J, Davis PJ, Bauche D, McReynolds LA
   PLoS One (2014) 9:e96498