Stem-loop bma-mir-5863

Accession

MI0023464

Description

Brugia malayi bma-mir-5863 precursor miRNA

Sequence

84 reads, 3.0 reads per million, 6 experiments

accggcgguuggaagggugccgggccagacuguacugcGUCACAGUCUUCUUCUUCCAUGACUGGAACGCGUAUUGUUCGagaacgccugaaauauauuuauucaag
.((((((.((....)).))))))....(((.((((.((((..(((((............)))))..)))))))).)))..........((((.((....))))))..

Structure

--accggcgguuggaagggugccgggcca   u    u    CA     UUCUU 
                             gac guac gcGU  CAGUC     C
                             ||| |||| ||||  |||||      
                             UUG UAUG CGCA  GUCAG     U
gaacuuauuuauauaaaguccgcaagaGC   U    -    AG     UACCU 

Annotation confidence High

Comments

This microRNA was experimentally validated from deep sequencing libraries in the closely related species Brugia pahangi [1].

Genome context

Bmal_v3_scaffold12: 622038-622144 [+]

Mature bma-miR-5863-5p

• Accession: MIMAT0057228
• Description: Brugia malayi bma-miR-5863-5p mature miRNA
• Sequence: 39 - GUCACAGUCUUCUUCUUCCAUG - 60
• Evidence: not_experimental

Mature bma-miR-5863-3p

• Accession: MIMAT0026362
• Description: Brugia malayi bma-miR-5863-3p mature miRNA
• Sequence: 60 - GACUGGAACGCGUAUUGUUCG - 80
• Evidence: not_experimental

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4