Stem-loop bma-mir-2e

Accession

MI0023472

Description

Brugia malayi bma-mir-2e precursor miRNA

Literature search

4 open access papers mention bma-mir-2e
(31 sentences)

Sequence

25792 reads, 4010.0 reads per million, 22 experiments

cuuaaaauauugguuuucggaucACCUGAAUUGAAUUGUGAUAUGuuacuauuuucuuaucaUAUCACAGUACUAUUCCGGGCAUccgugaaacaauuuacuuaaugu
........((((..((.(((((..((.((((.(.(((((((((((...............))))))))))).).)))).))..))))).))..))))...........

Structure

---cuuaaaau    gu  u     cA  U    U A           uuacua 
           auug  uu cggau  CC GAAU G AUUGUGAUAUG      u
           ||||  || |||||  || |||| | |||||||||||      u
           uaac  ag gccUA  GG CUUA C UGACACUAUac      u
uguaauucauu    aa  u     CG  C    U A           uauucu 

Annotation confidence High

Comments

This microRNA was experimentally validated from deep sequencing libraries in the closely related species Brugia pahangi [1].

Genome context

Bmal_v3_scaffold199: 29087-29194 [-]

Mature bma-miR-2e-5p

• Accession: MIMAT0057231
• Description: Brugia malayi bma-miR-2e-5p mature miRNA
• Sequence: 24 - ACCUGAAUUGAAUUGUGAUAUG - 45
• Evidence: experimental ; Illumina [2]

Mature bma-miR-2e-3p

• Accession: MIMAT0026369
• Description: Brugia malayi bma-miR-2e-3p mature miRNA
• Sequence: 63 - UAUCACAGUACUAUUCCGGGCAU - 85
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4


2. PubMed ID: 24824352
   Diversity and expression of microRNAs in the filarial parasite, Brugia malayi
   Poole CB, Gu W, Kumar S, Jin J, Davis PJ, Bauche D, McReynolds LA
   PLoS One (2014) 9:e96498