Stem-loop bma-mir-5880a

Accession

MI0023491

Description

Brugia malayi bma-mir-5880a precursor miRNA

Sequence

gauguccaaguuugaucuaacaaauuaccgacgugugcaaaaacuguuACAUCGGUAACUUGUUAGGUCAAAcuuggacacg
..(((((((((((((((((((((.(((((((.(((.(((.....)))))).))))))).)))))))))))))))))))))..

Structure

ga                     a       c   u   a 
  uguccaaguuugaucuaacaa uuaccga gug gca a
  ||||||||||||||||||||| ||||||| ||| ||| a
  acagguucAAACUGGAUUGUU AAUGGCU CAu ugu a
gc                     C       A   -   c 

Annotation confidence Not enough data

Comments

This microRNA was experimentally validated from deep sequencing libraries in the closely related species Brugia pahangi [1].

Genome context

Bmal_v3_scaffold24: 278001-278082 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from bma-mir-5880a

Mature bma-miR-5880a

• Accession: MIMAT0026380
• Description: Brugia malayi bma-miR-5880a mature miRNA
• Sequence: 49 - ACAUCGGUAACUUGUUAGGUCAAA - 72
• Evidence: not_experimental

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4