Stem-loop bma-mir-5882a-1

Accession

MI0023496

Description

Brugia malayi bma-mir-5882a-1 precursor miRNA

Sequence

2638 reads, 1109.0 reads per million, 26 experiments

agcaucggugacugucauaacuAUGCAUUAUUCUGGUUGCCCACGacaagauaugcugUGGGUAAUCAGGACAGUGCAUAUucaugacaccaacucacuguuucg
.....((((((.((((((...((((((((.(((((((((((((((.((.....)).))))))))))))))).))))))))...)))))).....)))))).....

Structure

agcau      ----c      aac        A               a  a 
     cgguga     ugucau   uAUGCAUU UUCUGGUUGCCCACG ca g
     ||||||     ||||||   |||||||| ||||||||||||||| || a
     gucacu     acagua   AUACGUGA AGGACUAAUGGGUgu gu u
gcuuu      caacc      cuU        C               c  a 

Annotation confidence High

Comments

This microRNA was experimentally validated from deep sequencing libraries in the closely related species Brugia pahangi [1].

Genome context

Bmal_v3_scaffold129: 20808-20912 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from bma-mir-5882a-1

Mature bma-miR-5882a-5p

• Accession: MIMAT0057236
• Description: Brugia malayi bma-miR-5882a-5p mature miRNA
• Sequence: 23 - AUGCAUUAUUCUGGUUGCCCACG - 45
• Evidence: experimental ; Illumina [2]

Mature bma-miR-5882a-3p

• Accession: MIMAT0026385
• Description: Brugia malayi bma-miR-5882a-3p mature miRNA
• Sequence: 59 - UGGGUAAUCAGGACAGUGCAUAU - 81
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4


2. PubMed ID: 24824352
   Diversity and expression of microRNAs in the filarial parasite, Brugia malayi
   Poole CB, Gu W, Kumar S, Jin J, Davis PJ, Bauche D, McReynolds LA
   PLoS One (2014) 9:e96498