Stem-loop bma-mir-5882b-2

Accession

MI0023500

Description

Brugia malayi bma-mir-5882b-2 precursor miRNA

Sequence

ugucaugaauaugcacuguccugauuacccacagcauaucuugucgUGGGCAACCAGAAUAAUGCAUAGUuaugacaguc
((((((((.((((((.(((.(((.((.(((((.(((.....))).))))).)).))).))).)))))).))))))))...

Structure

---        a      c   c   a  a     a   u 
   ugucauga uaugca ugu cug uu cccac gca a
   |||||||| |||||| ||| ||| || ||||| ||| u
   acaguauU AUACGU AUA GAC AA GGGUg ugu c
cug        G      A   A   C  C     c   u 

Annotation confidence Low

Comments

This microRNA was experimentally validated from deep sequencing libraries in the closely related species Brugia pahangi [1].

Genome context

Bmal_v3_scaffold17: 507491-507570 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from bma-mir-5882b-2

Mature bma-miR-5882b

• Accession: MIMAT0026386
• Description: Brugia malayi bma-miR-5882b mature miRNA
• Sequence: 47 - UGGGCAACCAGAAUAAUGCAUAGU - 70
• Evidence: not_experimental

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4