Stem-loop sbi-MIR5565g

Accession

MI0023511

Description

Sorghum bicolor sbi-MIR5565g precursor miRNA MIR5565

Gene
family

RF04087; MIR5565

Sequence

gggcuuguuuggauguagucggaUUCACAUCAAUCCACAUAUGUUGGaauggguuggaguguaauuugaacuaaauuccaccucaauccacuucaACACAUGUGGAUUGAGAUGAAUACgauaacauccaaacaaccggucu
.((.((((((((((((.((((..((((..(((((((((((.(((((((.((((((((.(((.((((((...)))))).))).)))))))).))))))).)))))))))))..))))..)))).)))))))))))))).....

Structure

----g  c            a    ga    CA           A       a        a   u      a 
     gg uuguuuggaugu gucg  UUCA  UCAAUCCACAU UGUUGGa uggguugg gug aauuug  
     || |||||||||||| ||||  ||||  ||||||||||| ||||||| |||||||| ||| |||||| a
     cc aacaaaccuaca uagC  AAGU  AGUUAGGUGUA ACAacuu accuaacu cac uuaaau  
ucugg  -            a    AU    AG           C       c        c   c      c 

Annotation confidence Not enough data

Genome context

chr8: 55678339-55678480 [+]

Mature sbi-miR5565g-5p

• Accession: MIMAT0026398
• Description: Sorghum bicolor sbi-miR5565g-5p mature miRNA
• Sequence: 24 - UUCACAUCAAUCCACAUAUGUUGG - 47
• Evidence: not_experimental

Mature sbi-miR5565g-3p

• Accession: MIMAT0026399
• Description: Sorghum bicolor sbi-miR5565g-3p mature miRNA
• Sequence: 96 - ACACAUGUGGAUUGAGAUGAAUAC - 119
• Evidence: not_experimental

References

1. PubMed ID: 22747909
   Computational identification and analysis of novel sugarcane microRNAs
   Thiebaut F, Grativol C, Carnavale-Bottino M, Rojas CA, Tanurdzic M, Farinelli L, Martienssen RA, Hemerly AS, Ferreira PC
   BMC Genomics (2012) 13:290