Stem-loop sbi-MIR5565g

Accession

MI0023511

Description

Sorghum bicolor sbi-MIR5565g precursor miRNA MIR5565

Gene
family

RF04087; MIR5565

Sequence

63875 reads, 1012.0 reads per million, 50 experiments

gggcuugUUUGGAUGUAGUCGGAUUCacaucaauccacauauguuggaauggguuggaguguaauuugaacuaaauuccaccucaauccacuuCAACACAUGUGGAUUGAGaugaauacgauaacauccaaacaaccggucu
.((.((((((((((((.((((..((((..(((((((((((.(((((((.((((((((.(((.((((((...)))))).))).)))))))).))))))).)))))))))))..))))..)))).)))))))))))))).....

Structure

----g  c            A    GA    ca           a       a        a   u      a 
     gg uugUUUGGAUGU GUCG  UUCa  ucaauccacau uguugga uggguugg gug aauuug  
     || |||||||||||| ||||  ||||  ||||||||||| ||||||| |||||||| ||| |||||| a
     cc aacaaaccuaca uagc  aagu  AGUUAGGUGUA ACAACuu accuaacu cac uuaaau  
ucugg  -            a    au    aG           C       c        c   c      c 

Annotation confidence Low

Genome context

chr8: 55678339-55678480 [+]

Mature sbi-miR5565g-5p

• Accession: MIMAT0026398
• Description: Sorghum bicolor sbi-miR5565g-5p mature miRNA
• Sequence: 8 - UUUGGAUGUAGUCGGAUUC - 26
• Evidence: not_experimental

Mature sbi-miR5565g-3p

• Accession: MIMAT0026399
• Description: Sorghum bicolor sbi-miR5565g-3p mature miRNA
• Sequence: 94 - CAACACAUGUGGAUUGAG - 111
• Evidence: not_experimental

References

1. PubMed ID: 22747909
   Computational identification and analysis of novel sugarcane microRNAs
   Thiebaut F, Grativol C, Carnavale-Bottino M, Rojas CA, Tanurdzic M, Farinelli L, Martienssen RA, Hemerly AS, Ferreira PC
   BMC Genomics (2012) 13:290