Stem-loop sbi-MIR6220

Accession

MI0023515

Description

Sorghum bicolor sbi-MIR6220 precursor miRNA

Literature search

1 open access papers mention sbi-MIR6220
(2 sentences)

Sequence

2674 reads, 117.0 reads per million, 48 experiments

ggccaugcugucgaacauauuacucuCUCCAUCCUAAAUUAUAAGacauuauaagaauccuagauagucaaaguaugacaaauuugaccaaauuuauauaauaaaauaauaacauuuaugauacuaacuaaacaucauuagauucuucuuuaauuauauuuuauaguauaucuacuugaucucauaaguuuuuauauuuuucuauaauuuugguuaaacuugagauaauuugauucucuaaguuuuuugaaaugcCUUAUAAUUUGGGAUGGAGAGAGcuuuuuuuauuguuaaaguagugcc
(((..((((....((((.....(((((((((((((((((((((((.((((.((((((.(.((((.(((((((.(((..(((.((((((((((.(((((....((((((..((.((((((((............((((.(((((....((.(((.......))).))...)))))..)))).)))))))).))..))))))..))))).)))))))))).)))..))).))))))).)))).).)))))).)))).)))))))))))))))))))))))..........))))..))))..)))

Structure

   ca    gucg    -----uauua                       a    a      u c    u       g   ga   a          u     uaau      au  c        uacuaacuaaac    -u     ucuu  u   uu 
ggc  ugcu    aaca          cucuCUCCAUCCUAAAUUAUAAG cauu uaagaa c uaga agucaaa uau  caa uuugaccaaa uuaua    aaaaua  aa auuuauga            auca  uagau    cu uaa  a
|||  ||||    ||||          ||||||||||||||||||||||| |||| |||||| | |||| ||||||| |||  ||| |||||||||| |||||    ||||||  || ||||||||            ||||  |||||    || |||  u
ccg  auga    uugu          GAGAGAGGUAGGGUUUAAUAUUC guaa guuuuu g aucu uuaguuu aua  guu aaauugguuu aauau    uuuuau  uu ugaauacu            uagu  aucua    ga auu  a
   ug    --aa    uauuuuuuuc                       c    a      u a    c       a   ga   c          u     --cu      au  u        -----------c    uc     -uau  u   uu 

Annotation confidence Medium

Genome context

chr6: 60205272-60205574 [-]

Mature sbi-miR6220-5p

• Accession: MIMAT0026404
• Description: Sorghum bicolor sbi-miR6220-5p mature miRNA
• Sequence: 27 - CUCCAUCCUAAAUUAUAAG - 45
• Evidence: not_experimental

Mature sbi-miR6220-3p

• Accession: MIMAT0026405
• Description: Sorghum bicolor sbi-miR6220-3p mature miRNA
• Sequence: 256 - CUUAUAAUUUGGGAUGGAGAGAG - 278
• Evidence: not_experimental

References

1. PubMed ID: 22747909
   Computational identification and analysis of novel sugarcane microRNAs
   Thiebaut F, Grativol C, Carnavale-Bottino M, Rojas CA, Tanurdzic M, Farinelli L, Martienssen RA, Hemerly AS, Ferreira PC
   BMC Genomics (2012) 13:290