Stem-loop sbi-MIR437x

Accession

MI0023516

Description

Sorghum bicolor sbi-MIR437x precursor miRNA

Literature search

3 open access papers mention sbi-MIR437x
(5 sentences)

Sequence

uacucccuccgucacugaaagcuguaauuucUAGAGUUGUCCUAAGUCAAACUUUuacaacuuugaucaaauuuauagaaaaaaaugcuaagauuuauaguaccaaaauaauaccauuaaauuuauuauagaauauauuuuuaaaauauacuuauuuuaugucauagauauugauacucuuuuuuauaaaauuagucaaaguuaaaaaaAUUUGACUGACACGGAUUCUAGGAguugaagcuuucggagacggagggagua
(((((((((((((.(((((((((.((((((((((((((......(((((((.((((..(((((((((.((.(((((((((((...(((((.......))))).....((((((..........))))))............(((((((....)))))))(((((.......)))))...))))))))))).)).)))))))))..)))).)))))))......)))))))))))))).))))))))).)))))))))))))

Structure

             a         g              GUCCUA       C    ac         c  a           aaaugcuaagauuuauaguaccaaaauaauaccauuaaauuuauuauagaauauauuuu       u 
uacucccuccguc cugaaagcu uaauuucUAGAGUU      AGUCAAA UUUu  aacuuugau aa uuuauagaaaa                                                           uaaaaua a
||||||||||||| ||||||||| ||||||||||||||      ||||||| ||||  ||||||||| || |||||||||||                                                           |||||||  
augagggaggcag ggcuuucga guugAGGAUCUUAG      UCAGUUU aaaa  uugaaacug uu aaauauuuuuu                                                           auuuuau c
             a         a              GCACAG       A    aa         a  a           ---------------------------------------cucauaguuauagauacugu       u 

Annotation confidence Not enough data

Genome context

chr1: 21931891-21932151 [+]

Mature sbi-miR437x-5p

• Accession: MIMAT0026406
• Description: Sorghum bicolor sbi-miR437x-5p mature miRNA
• Sequence: 32 - UAGAGUUGUCCUAAGUCAAACUUU - 55
• Evidence: not_experimental

Mature sbi-miR437x-3p

• Accession: MIMAT0026407
• Description: Sorghum bicolor sbi-miR437x-3p mature miRNA
• Sequence: 210 - AUUUGACUGACACGGAUUCUAGGA - 233
• Evidence: not_experimental

References

1. PubMed ID: 22747909
   Computational identification and analysis of novel sugarcane microRNAs
   Thiebaut F, Grativol C, Carnavale-Bottino M, Rojas CA, Tanurdzic M, Farinelli L, Martienssen RA, Hemerly AS, Ferreira PC
   BMC Genomics (2012) 13:290