Stem-loop sbi-MIR6230

Accession

MI0023531

Description

Sorghum bicolor sbi-MIR6230 precursor miRNA

Literature search

2 open access papers mention sbi-MIR6230
(4 sentences)

Sequence

1410 reads, 57.0 reads per million, 47 experiments

guccacaaacuuuguaaacacauUUUUGGGUCCCUAAACUUGUUauguggugcagcgcacaucccuaaacuuauaaaauggugcaccgcagguccauuucuggaccauaccgaccacuguggugcgccACUUAACAAGUUUAGGGAucuagaaaugcguuuucaaaguucgugggc
((((((.(((((((.((((.(((((((((((((((((((((((((.(((((((.((((.(((...............)))))))((((((((((((....))))))...........))))))))))))).))))))))))))))))))))))))).)))).))))))).))))))

Structure

      a       u    a                         u       --------------------------------------a    a   cccuaa 
guccac aacuuug aaac cauUUUUGGGUCCCUAAACUUGUUa guggugc                                       gcgc cau      a
|||||| ||||||| |||| ||||||||||||||||||||||||| |||||||                                       |||| |||      c
cgggug uugaaac uuug guaaagaucuAGGGAUUUGAACAAU CAccgcg                                       cgug gua      u
      c       u    c                         U       uggugucaccagccauaccaggucuuuaccuggacgcca    -   aaauau 

Annotation confidence Low

Genome context

chr9: 50124113-50124288 [+]

Mature sbi-miR6230-5p

• Accession: MIMAT0026436
• Description: Sorghum bicolor sbi-miR6230-5p mature miRNA
• Sequence: 24 - UUUUGGGUCCCUAAACUUGUU - 44
• Evidence: not_experimental

Mature sbi-miR6230-3p

• Accession: MIMAT0026437
• Description: Sorghum bicolor sbi-miR6230-3p mature miRNA
• Sequence: 129 - ACUUAACAAGUUUAGGGA - 146
• Evidence: not_experimental

References

1. PubMed ID: 22747909
   Computational identification and analysis of novel sugarcane microRNAs
   Thiebaut F, Grativol C, Carnavale-Bottino M, Rojas CA, Tanurdzic M, Farinelli L, Martienssen RA, Hemerly AS, Ferreira PC
   BMC Genomics (2012) 13:290