Stem-loop sbi-MIR6235

Accession

MI0023540

Description

Sorghum bicolor sbi-MIR6235 precursor miRNA

Literature search

1 open access papers mention sbi-MIR6235
(1 sentences)

Sequence

24137 reads, 1093.0 reads per million, 50 experiments

uguuuacuaauuuauuguGAGAGAAAAAUACUGUUGgcuggcagaaaaaguauggcacaaguauggcacagucuuguucauuugucuuauaagccguauuuuuuuuugucaacgaacaguAUUUUUCUCUUACAAUAAaaucagcgaaca
(((((.((..(((((((((((((((((((((((((.(.((((((((((((((((((((((((..((((......)))).)))))).......)))))).)))))))))))).).)))))))))))))))))))))))))...)).)))))

Structure

     a  -aa                         G c            -      -------      au    ca 
uguuu cu   uuuauuguGAGAGAAAAAUACUGUU g uggcagaaaaag uauggc       acaagu  ggca  g
||||| ||   ||||||||||||||||||||||||| | |||||||||||| ||||||       ||||||  ||||   
acaag ga   aAAUAACAUUCUCUUUUUAugacaa c acuguuuuuuuu augccg       uguuua  uugu  u
     c  cua                         g a            u      aauauuc      -c    uc 

Annotation confidence Low

Genome context

chr7: 8666285-8666434 [+]

Mature sbi-miR6235-5p

• Accession: MIMAT0026454
• Description: Sorghum bicolor sbi-miR6235-5p mature miRNA
• Sequence: 19 - GAGAGAAAAAUACUGUUG - 36
• Evidence: not_experimental

Mature sbi-miR6235-3p

• Accession: MIMAT0026455
• Description: Sorghum bicolor sbi-miR6235-3p mature miRNA
• Sequence: 121 - AUUUUUCUCUUACAAUAA - 138
• Evidence: not_experimental

References

1. PubMed ID: 22747909
   Computational identification and analysis of novel sugarcane microRNAs
   Thiebaut F, Grativol C, Carnavale-Bottino M, Rojas CA, Tanurdzic M, Farinelli L, Martienssen RA, Hemerly AS, Ferreira PC
   BMC Genomics (2012) 13:290