Stem-loop ssc-mir-7138

Accession

MI0023571

Description

Sus scrofa ssc-mir-7138 precursor miRNA

Literature search

1 open access papers mention ssc-mir-7138
(2 sentences)

Sequence

UCCCAGCAAGUGUCCAUCCAUCUcuguguccauaagaGAGGACUGGCCUUGCAGGGUGC
.(((.(((((.(.((((((.(((((.........)))))))).))))))))).)))...

Structure

--U   A     U U   -   A     gug 
   CCC GCAAG G CCA UCC UCUcu   u
   ||| ||||| | ||| ||| |||||   c
   GGG CGUUC C GGU AGG AGaga   c
CGU   A     - -   C   -     aua 

Annotation confidence Not enough data

Genome context

chr2: 82423677-82423735 [-]

Mature ssc-miR-7138-5p

• Accession: MIMAT0028151
• Description: Sus scrofa ssc-miR-7138-5p mature miRNA
• Sequence: 1 - UCCCAGCAAGUGUCCAUCCAUCU - 23
• Evidence: experimental ; Illumina [1]

Mature ssc-miR-7138-3p

• Accession: MIMAT0028152
• Description: Sus scrofa ssc-miR-7138-3p mature miRNA
• Sequence: 38 - GAGGACUGGCCUUGCAGGGUGC - 59
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22953717
   Profiling microRNAs in lung tissue from pigs infected with Actinobacillus pleuropneumoniae
   Podolska A, Anthon C, Bak M, Tommerup N, Skovgaard K, Heegaard PM, Gorodkin J, Cirera S, Fredholm M
   BMC Genomics (2012) 13:459