Stem-loop ssc-mir-7139

Accession

MI0023572

Description

Sus scrofa ssc-mir-7139 precursor miRNA

Literature search

1 open access papers mention ssc-mir-7139
(2 sentences)

Sequence

1 reads, 1 reads per million, 1 experiments

CCAUUCCUUCGUCUGUGCACUAGaaaaauaacaguaccUAGGGCACAGGAUGGGAUGAGG
.((((((....(((((((.((((..............)))).)))))))..))))))...

Structure

--C      UUCG       A    aaaaau 
   CAUUCC    UCUGUGC CUAG      a
   ||||||    ||||||| ||||       
   GUAGGG    GGACACG GAUc      a
GGA      --UA       G    caugac 

Annotation confidence Not enough data

Genome context

chr5: 109259471-109259530 [+]

Mature ssc-miR-7139-5p

• Accession: MIMAT0028153
• Description: Sus scrofa ssc-miR-7139-5p mature miRNA
• Sequence: 1 - CCAUUCCUUCGUCUGUGCACUAG - 23
• Evidence: experimental ; Illumina [1]

Mature ssc-miR-7139-3p

• Accession: MIMAT0028154
• Description: Sus scrofa ssc-miR-7139-3p mature miRNA
• Sequence: 39 - UAGGGCACAGGAUGGGAUGAGG - 60
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22953717
   Profiling microRNAs in lung tissue from pigs infected with Actinobacillus pleuropneumoniae
   Podolska A, Anthon C, Bak M, Tommerup N, Skovgaard K, Heegaard PM, Gorodkin J, Cirera S, Fredholm M
   BMC Genomics (2012) 13:459