Stem-loop ssc-mir-7140

Accession

MI0023573

Description

Sus scrofa ssc-mir-7140 precursor miRNA

Literature search

1 open access papers mention ssc-mir-7140
(2 sentences)

Sequence

4155 reads, 6.0 reads per million, 139 experiments

CAACUCAAGGGGGCAUCAUUCacuucauagucucugugAAUGAUGCCCCUUAGAGUUGAGc
((((((.((((((((((((((((............)))))))))))))))).))))))...

Structure

---      A                uucau 
   CAACUC AGGGGGCAUCAUUCac     a
   |||||| ||||||||||||||||      
   GUUGAG UUCCCCGUAGUAAgug     g
cGA      A                ucucu 

Annotation confidence High

Genome context

chr17: 39852404-39852464 [+]

Mature ssc-miR-7140-5p

• Accession: MIMAT0028155
• Description: Sus scrofa ssc-miR-7140-5p mature miRNA
• Sequence: 1 - CAACUCAAGGGGGCAUCAUUC - 21
• Evidence: experimental ; Illumina [1]

Mature ssc-miR-7140-3p

• Accession: MIMAT0028156
• Description: Sus scrofa ssc-miR-7140-3p mature miRNA
• Sequence: 39 - AAUGAUGCCCCUUAGAGUUGAG - 60
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22953717
   Profiling microRNAs in lung tissue from pigs infected with Actinobacillus pleuropneumoniae
   Podolska A, Anthon C, Bak M, Tommerup N, Skovgaard K, Heegaard PM, Gorodkin J, Cirera S, Fredholm M
   BMC Genomics (2012) 13:459