Stem-loop ssc-mir-7142

Accession

MI0023575

Description

Sus scrofa ssc-mir-7142 precursor miRNA

Literature search

1 open access papers mention ssc-mir-7142
(1 sentences)

Sequence

1 reads, 2 reads per million, 1 experiments

ACUCUCCGAGGGGCCUUCAAGGGcaaguucuugucaccUUUGUUGGCUCCUCUGAAGUGA
(((.((.((((((((..(((((((((....)))...))))))..)))))))).)))))..

Structure

--   C  C        UU      ---   g 
  ACU UC GAGGGGCC  CAAGGG   caa u
  ||| || ||||||||  ||||||   |||  
  UGA AG CUCCUCGG  GUUUcc   guu u
AG   -  U        UU      acu   c 

Annotation confidence Not enough data

Genome context

chr2: 7444711-7444770 [-]

Mature ssc-miR-7142-5p

• Accession: MIMAT0028159
• Description: Sus scrofa ssc-miR-7142-5p mature miRNA
• Sequence: 1 - ACUCUCCGAGGGGCCUUCAAGGG - 23
• Evidence: experimental ; Illumina [1]

Mature ssc-miR-7142-3p

• Accession: MIMAT0028160
• Description: Sus scrofa ssc-miR-7142-3p mature miRNA
• Sequence: 39 - UUUGUUGGCUCCUCUGAAGUGA - 60
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22953717
   Profiling microRNAs in lung tissue from pigs infected with Actinobacillus pleuropneumoniae
   Podolska A, Anthon C, Bak M, Tommerup N, Skovgaard K, Heegaard PM, Gorodkin J, Cirera S, Fredholm M
   BMC Genomics (2012) 13:459