miRBase entry: ssc-mir-7143

Stem-loop ssc-mir-7143


Accession
MI0023576
Description
Sus scrofa ssc-mir-7143 precursor miRNA


Sequence

959 reads, 2.0 reads per million, 165 experiments
AAGCUCAGCUCUGAAGUGCAGAggcuguuugcacuuccUCUGCACUUGAAGCUGAGACUga
.(((((((((.(.(((((((((((..((....))..))))))))))).)))))))).))..

Structure
-A  -       C G           cu  u 
  AG CUCAGCU U AAGUGCAGAgg  gu u
  || ||||||| | |||||||||||  ||  
  UC GAGUCGA A UUCACGUCUcc  ca g
ag  A       - G           uu  c 


Annotation confidence Low
Do you think this miRNA is real?

Genome context
chr9: 31199350-31199410 [+]

Database links

Mature ssc-miR-7143-5p

Accession MIMAT0028161
Description Sus scrofa ssc-miR-7143-5p mature miRNA
Sequence 1 - AAGCUCAGCUCUGAAGUGCAGA - 22
Evidence experimental
Illumina [1]

Mature ssc-miR-7143-3p

Accession MIMAT0028162
Description Sus scrofa ssc-miR-7143-3p mature miRNA
Sequence 39 - UCUGCACUUGAAGCUGAGACU - 59
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22953717
    Profiling microRNAs in lung tissue from pigs infected with Actinobacillus pleuropneumoniae
    Podolska A, Anthon C, Bak M, Tommerup N, Skovgaard K, Heegaard PM, Gorodkin J, Cirera S, Fredholm M
    BMC Genomics (2012) 13:459