miRBase entry: hcmv-mir-US22

Stem-loop hcmv-mir-US22

Accession

MI0023578

Description

Human cytomegalovirus hcmv-mir-US22 precursor miRNA

Sequence

ggggaccUGUUUCAGCGUGUGUCCGCGGGcgugcauggcuuuugcUCGCCGGCCGCGCUGUAACCAGGccuc
((((.((((.(((((((((.(((.(((((((.((...))...))))))).)))))))))).)).))))))))

Structure

    a    U  -       U   C       --u  a 
gggg ccUG UU CAGCGUG GUC GCGGGcg   gc  
|||| |||| || ||||||| ||| |||||||   || u
cucc GGAC AA GUCGCGC CGG CGCUcgu   cg  
    -    C  U       -   C       uuu  g

Annotation confidence Not enough data

Do you think this miRNA is real?

Genome context

HEHCMVCG: 209922-209993 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from hcmv-mir-US22

Name	Accession	Chromosome	Start	End	Strand	Confidence

Disease association

hcmv-mir-US22 is associated with one or more human diseases in the Human microRNA Disease Database

Disease	Description	Category	PubMed ID

Database links

Mature hcmv-miR-US22-5p

Accession	MIMAT0028165
Description	Human cytomegalovirus hcmv-miR-US22-5p mature miRNA
Sequence	8 - UGUUUCAGCGUGUGUCCGCGGG - 29
Evidence	experimental Illumina [1]

Mature hcmv-miR-US22-3p

Accession	MIMAT0028166
Description	Human cytomegalovirus hcmv-miR-US22-3p mature miRNA
Sequence	46 - UCGCCGGCCGCGCUGUAACCAGG - 68
Evidence	experimental Illumina [1]

References

PubMed ID: 22013051
High-resolution profiling and analysis of viral and host small RNAs during human cytomegalovirus infection
"Stark TJ, Arnold JD, Spector DH, Yeo GW"
"J Virol (2012) 86:226-235