miRBase entry: hcmv-mir-US29

Stem-loop hcmv-mir-US29

Accession

MI0023579

Description

Human cytomegalovirus hcmv-mir-US29 precursor miRNA

Sequence

ucacguuUGGAUGUGCUCGGACCGUGACGguggguuucgucgcgCCCACGGUCCGGGCACAAUCAaccgugg
.((((.((((.(((((((((((((((..((((.(......).))))))))))))))))))).)))).)))).

Structure

u    u    A               AC    g uu 
 cacg uUGG UGUGCUCGGACCGUG  Ggug g  u
 |||| |||| |||||||||||||||  |||| |   
 gugc aACU ACACGGGCCUGGCAC  CCgc c  c
g    c    A               --    g ug

Annotation confidence Not enough data

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Comments

Stark et al. named this sequence mir-US33as in [1].

Genome context

HEHCMVCG: 220469-220540 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from hcmv-mir-US29

Name	Accession	Chromosome	Start	End	Strand	Confidence

Disease association

hcmv-mir-US29 is associated with one or more human diseases in the Human microRNA Disease Database

Disease	Description	Category	PubMed ID

Database links

Mature hcmv-miR-US29-5p

Accession	MIMAT0028167
Description	Human cytomegalovirus hcmv-miR-US29-5p mature miRNA
Sequence	8 - UGGAUGUGCUCGGACCGUGACG - 29
Evidence	experimental Illumina [1]

Mature hcmv-miR-US29-3p

Accession	MIMAT0028168
Description	Human cytomegalovirus hcmv-miR-US29-3p mature miRNA
Sequence	45 - CCCACGGUCCGGGCACAAUCA - 65
Evidence	experimental Illumina [1]

References

PubMed ID: 22013051
High-resolution profiling and analysis of viral and host small RNAs during human cytomegalovirus infection
"Stark TJ, Arnold JD, Spector DH, Yeo GW"
"J Virol (2012) 86:226-235