Stem-loop dre-mir-7146

Accession

MI0023605

Description

Danio rerio dre-mir-7146 precursor miRNA

Literature search

2 open access papers mention dre-mir-7146
(2 sentences)

Sequence

10935 reads, 52.0 reads per million, 258 experiments

gacagaaaaagagauauuuugaaaaauguuguaagCCGGUAACCAUUGACCUCCAUAguauuuguuuucccuguUAUGAAGGUCAAUGGUUACCaguuuucagcuuucuucugaacaucaucuuuuuuguu
(((((((((.(((((.(((.(((.((.((((.((((.(((((((((((((((.(((((((...........))))))).))))))))))))))).)))).)))).)).))).))).))).)))))))))))

Structure

         a  -   a   u   a  u    u    C               C       uuug 
gacagaaaa ga gau uuu gaa aa guug aagC GGUAACCAUUGACCU CAUAgua    u
||||||||| || ||| ||| ||| || |||| |||| ||||||||||||||| |||||||    u
uuguuuuuu cu cua aag cuu uu cgac uuug CCAUUGGUAACUGGA GUAUugu    u
         -  a   c   u   c  u    u    a               A       cccu 

Annotation confidence Medium

Genome context

chr20: 5074924-5075054 [+]

Mature dre-miR-7146-5p

• Accession: MIMAT0028203
• Description: Danio rerio dre-miR-7146-5p mature miRNA
• Sequence: 36 - CCGGUAACCAUUGACCUCCAUA - 57
• Evidence: experimental ; Illumina [1]

Mature dre-miR-7146-3p

• Accession: MIMAT0028204
• Description: Danio rerio dre-miR-7146-3p mature miRNA
• Sequence: 75 - UAUGAAGGUCAAUGGUUACC - 94
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22408181
   Transcriptome-wide analysis of small RNA expression in early zebrafish development
   "Wei C, Salichos L, Wittgrove CM, Rokas A, Patton JG"
   "RNA (2012) 18:915-929