miRBase entry: mdo-mir-7258

Stem-loop mdo-mir-7258


Accession
MI0023755
Description
Monodelphis domestica mdo-mir-7258 precursor miRNA


Sequence

46 reads, 3 reads per million, 2 experiments
AAAAGGACUUGACUGCAGCAggcgagcccgggacgguuuauugCUGCAAUCCAGGCCCUUUUAUUGC
((((((.(((((.((((((((..(((((......))))).)))))))).).)))).)))))).....

Structure
-----      A    - C        gc     cg 
     AAAAGG CUUG A UGCAGCAg  gagcc  g
     |||||| |||| | ||||||||  |||||   
     UUUUCC GGAC U ACGUCguu  uuugg  g
CGUUA      C    C A        -a     ca 


Annotation confidence Not enough data
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Genome context
chr1: 587845369-587845435 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from mdo-mir-7258
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mdo-miR-7258-5p

Accession MIMAT0028482
Description Monodelphis domestica mdo-miR-7258-5p mature miRNA
Sequence 1 - AAAAGGACUUGACUGCAGCA - 20
Evidence experimental
Illumina [1]

Mature mdo-miR-7258-3p

Accession MIMAT0028483
Description Monodelphis domestica mdo-miR-7258-3p mature miRNA
Sequence 44 - CUGCAAUCCAGGCCCUUUUAUUGC - 67
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23034410
    Birth and expression evolution of mammalian microRNA genes
    "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
    "Genome Res (2013) 23:34-45