Stem-loop mdo-mir-449b

Accession

MI0023813

Description

Monodelphis domestica mdo-mir-449b precursor miRNA

Sequence

177 reads, 27.0 reads per million, 2 experiments

ccagggucagguAGGCAGUGCGCUGUAAGCUGGCUGcuuggcucaauuuagCAGUCAGGACUGCCCUGCCACUugcuccugg
((((((.(((((.(((((.(.((.((...(((((((((...........))))))))).)).))))))))))))).))))))

Structure

      u     A     U C  U  AAG         uggc 
ccaggg caggu GGCAG G GC GU   CUGGCUGcu    u
|||||| ||||| ||||| | || ||   |||||||||    c
gguccu guUCA CCGUC C CG CA   GACUGACga    a
      c     -     - -  U  --G         uuua 

Annotation confidence High

Genome context

ref|NC_077229.2|: 24293456-24293537 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from mdo-mir-449b

Mature mdo-miR-449b-5p

• Accession: MIMAT0028582
• Description: Monodelphis domestica mdo-miR-449b-5p mature miRNA
• Sequence: 13 - AGGCAGUGCGCUGUAAGCUGGCUG - 36
• Evidence: experimental ; Illumina [1]

Mature mdo-miR-449b-3p

• Accession: MIMAT0028583
• Description: Monodelphis domestica mdo-miR-449b-3p mature miRNA
• Sequence: 52 - CAGUCAGGACUGCCCUGCCACU - 73
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45