Stem-loop mdo-mir-1643b

Accession

MI0023822

Description

Monodelphis domestica mdo-mir-1643b precursor miRNA

Sequence

328 reads, 9 reads per million, 5 experiments

AUCCUUACUAAGGGCACUUUUUCugccaacugaggaAAAAGUGCUGCUAGUGGGGAAGU
.(((((((((..((((((((((((.........))))))))))))..)))))))))...

Structure

--A         AG            gcc 
   UCCUUACUA  GGCACUUUUUCu   a
   |||||||||  ||||||||||||   a
   AGGGGUGAU  UCGUGAAAAagg   c
UGA         CG            agu 

Annotation confidence Not enough data

Genome context

chr4: 400890701-400890759 [-]

Clustered miRNAs

6 other miRNAs are < 10 kb from mdo-mir-1643b

Mature mdo-miR-1643b-5p

• Accession: MIMAT0028598
• Description: Monodelphis domestica mdo-miR-1643b-5p mature miRNA
• Sequence: 1 - AUCCUUACUAAGGGCACUUUUUC - 23
• Evidence: experimental ; Illumina [1]

Mature mdo-miR-1643b-3p

• Accession: MIMAT0028599
• Description: Monodelphis domestica mdo-miR-1643b-3p mature miRNA
• Sequence: 37 - AAAAGUGCUGCUAGUGGGGAAGU - 59
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45