Stem-loop mdo-mir-30c-2

Accession

MI0023835

Description

Monodelphis domestica mdo-mir-30c-2 precursor miRNA

Sequence

109038 reads, 1757 reads per million, 5 experiments

UGUAAACAUCCUACACUCUCAGCugugagcucaagguggcUGGGAGAGGGCUGUUUACUCC
.(((((((.(((...(((((((((....(((...)))))))))))).))).)))))))...

Structure

--U       U   ACA         guga   c 
   GUAAACA CCU   CUCUCAGCu    gcu  
   ||||||| |||   |||||||||    ||| a
   CAUUUGU GGG   GAGGGUcgg    ugg  
CCU       C   --A         ----   a 

Annotation confidence Medium

Genome context

chr4: 424723799-424723859 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from mdo-mir-30c-2

Mature mdo-miR-30c-5p

• Accession: MIMAT0028502
• Description: Monodelphis domestica mdo-miR-30c-5p mature miRNA
• Sequence: 1 - UGUAAACAUCCUACACUCUCAGC - 23
• Evidence: experimental ; Illumina [1]

Mature mdo-miR-30c-2-3p

• Accession: MIMAT0031090
• Description: Monodelphis domestica mdo-miR-30c-2-3p mature miRNA
• Sequence: 41 - UGGGAGAGGGCUGUUUACUCC - 61
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45