Stem-loop mdo-mir-1544d

Accession

MI0023931

Description

Monodelphis domestica mdo-mir-1544d precursor miRNA

Sequence

223902 reads, 3903 reads per million, 5 experiments

UGCACCCAGGGAUAUAAUAGCGGuucacuuggaagcccCCUUUUCUAUCCCUGGUACUGGU
.....(((((((((.((.((.((((........))))..)).)).))))))))).......

Structure

--UGCAC         U  U  -C    cac 
       CCAGGGAUA AA AG  GGuu   u
       ||||||||| || ||  ||||    
       GGUCCCUAU UU UC  ccga   u
UGGUCAU         C  U  Cc    agg 

Annotation confidence Not enough data

Genome context

chrX: 14010514-14010574 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from mdo-mir-1544d

Mature mdo-miR-1544d-5p

• Accession: MIMAT0028754
• Description: Monodelphis domestica mdo-miR-1544d-5p mature miRNA
• Sequence: 1 - UGCACCCAGGGAUAUAAUAGCGG - 23
• Evidence: experimental ; Illumina [1]

Mature mdo-miR-1544d-3p

• Accession: MIMAT0028755
• Description: Monodelphis domestica mdo-miR-1544d-3p mature miRNA
• Sequence: 39 - CCUUUUCUAUCCCUGGUACUGGU - 61
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45