Stem-loop gga-mir-7475

Accession

MI0024148

Description

Gallus gallus gga-mir-7475 precursor miRNA

Literature search

1 open access papers mention gga-mir-7475
(2 sentences)

Sequence

1843 reads, 4.0 reads per million, 180 experiments

ccgCCGCCGCCGCGCCCUCCgcaccgcggccggcagcgcugugaggACGGGCGGGUGGGCGCGGU
((((..(((((.((((((((.(((.(((........))).))).))).))))))))))..)))).

Structure

-    CG     G     -   g   c   gcc 
 ccgC  CCGCC CGCCC UCC cac gcg   g
 ||||  ||||| ||||| ||| ||| |||    
 GGCG  GGUGG GCGGG Agg gug cgc   g
U    CG     -     C   a   u   gac 

Annotation confidence Medium

Comments

This sequence does not map exactly to the galGal4.0 chicken genome assembly, but is annotated based on a Trace Achive sequence (tuj76a09_t167e167.b2).

Genome context

9: 3325664-3325728 [+]

Mature gga-miR-7475-5p

• Accession: MIMAT0029104
• Description: Gallus gallus gga-miR-7475-5p mature miRNA
• Sequence: 4 - CCGCCGCCGCGCCCUCC - 20
• Evidence: experimental ; Illumina [1]

Mature gga-miR-7475-3p

• Accession: MIMAT0029105
• Description: Gallus gallus gga-miR-7475-3p mature miRNA
• Sequence: 47 - ACGGGCGGGUGGGCGCGGU - 65
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45