Stem-loop ghr-MIR7484a

Accession

MI0024166

Description

Gossypium hirsutum ghr-MIR7484a precursor miRNA

Literature search

1 open access papers mention ghr-MIR7484a
(2 sentences)

Sequence

8799 reads, 465.0 reads per million, 51 experiments

uaaacuaguuUUUGUAUAUUAGAUCAAAGAGCAAaccagucauuuguuaaaaauuucauacauuuuuacuguuaaaaacugguccuuauaccucagcaugaaguacacauggcacauguaauugccuagucauucugucaauuaaaccaguuuucaaaaguaaaaAUGGAUGGAAUUUUUAACAaaaaagaccaguuugcucuuugauuuaauauacagagacuaauuug
.....(((((((((((((((((((((((((((((((..(((.((((((((((((((((..((((((((((....(((((((((..(((.....(((.((((.........((((........))))...)))).))).....))))))))))))....))))))))))..))))))))))))))))...)))..))))))))))))))))))))))))))))))).....

Structure

uaaac                               ca   --a                ua          guua         cc   uaccu   c    aguacacau    cau 
     uaguuUUUGUAUAUUAGAUCAAAGAGCAAac  guc   uuuguuaaaaauuuca  cauuuuuacu    aaaacuggu  uua     cag auga         ggca   g
     |||||||||||||||||||||||||||||||  |||   ||||||||||||||||  ||||||||||    |||||||||  |||     ||| ||||         ||||    
     aucagagacauauaauuuaguuucucguuug  cag   aaACAAUUUUUAAGGU  GUAaaaauga    uuuugacca  aau     guc uacu         ccgu   u
guuua                               ac   aaa                AG          aaac         --   uaacu   u    ------gau    uaa 

Annotation confidence Low

Genome context

Unknown

Mature ghr-miR7484a-5p

• Accession: MIMAT0029124
• Description: Gossypium hirsutum ghr-miR7484a-5p mature miRNA
• Sequence: 11 - UUUGUAUAUUAGAUCAAAGAGCAA - 34
• Evidence: experimental ; Illumina [1]

Mature ghr-miR7484a-3p

• Accession: MIMAT0055312
• Description: Gossypium hirsutum ghr-miR7484a-3p mature miRNA
• Sequence: 166 - AUGGAUGGAAUUUUUAACA - 184
• Evidence: experimental ; unknown

References

1. PubMed ID: 22138860
   A comparative miRNAome analysis reveals seven fiber initiation-related and 36 novel miRNAs in developing cotton ovules
   "Wang ZM, Xue W, Dong CJ, Jin LG, Bian SM, Wang C, Wu XY, Liu JY"
   "Mol Plant (2012) 5:889-900