Stem-loop ghr-MIR7485

Accession

MI0024168

Description

Gossypium hirsutum ghr-MIR7485 precursor miRNA

Sequence

augaccaucuAAAGACAUCUUUGAAUUCUUGGAGuaauuccaugaggucucgucuugucuuugcagagaucucaguuccaauuuucaccucuuucccuucuuccaagcucacaacuucuauugcuuccuugugagguagaauuuguuuuucuuccuauucuaccauccuuaucaaauccaaagauaaaccaccaucuaugucaccuucaaaguccugcgaucccucuaaacacauguuucauucaaaagaaaacucugaguuuguagcggcgucauucacgucauugauauacacggaccuaauaugguuacaaaagaauguaugaauuuauguacaauuauuugugcaauaugauuauaaaugaaagaauaauuuaagguauuuacucguauagaaagaauaaagaauauuugcucgaagaauugcaaagauguguuuuauuaaaaua
..........(((.((((((((((((((((.((((((.....(((((((((..(........)..)))))))))......(((((....((((((.............((((((..............))))))((((((((..(........)..))))))))....(((((.........)))))....((...(((((((...........((((((...(((..........((((........)))).....))).)))))).(((((.....)))))..)))))))...))(((......)))((((......))))........(((((((....)))))))((((((...((((((....((....))....)))))).)))))).))))))....)))))..)))))).))))))).))))))))).)))..........

Structure

augaccaucu   G         -       G      uuccaugaggucucgucuugucuuugcagagaucucaguucca     cacc      -ccuucuuccaagcucacaacuucuauugcuuccuugugagguagaauuuguuuuucuuccuauucuaccauccuuaucaaauccaaagauaaacca  auc       -------ccuucaaaguc      ucccucuaaacacauguuu 
          AAA ACAUCUUUG AAUUCUU GAGuaa                                           auuuu    ucuuuc                                                                                                 cc   uauguca                  cugcga                   c
          ||| ||||||||| ||||||| ||||||                                           |||||    ||||||                                                                                                 ||   |||||||                  ||||||                   a
          uuu uguagaaac uuaagaa cucguu                                           uaaga    agaaag                                                                                                 gg   auauagu                  gauguu                   u
auaaaauuau   g         g       g      -----------------------------------------ua     aaua      auaugcucauuuauggaauuuaauaagaaaguaaauauuaguauaacguguuuauuaacauguauuuaaguauguaagaaaacauugguauaaucca  cac       uacugcacuuacugcggc      ugagucucaaaagaaaacu 

Annotation confidence Not enough data

Genome context

Unknown

Mature ghr-miR7485

• Accession: MIMAT0029126
• Description: Gossypium hirsutum ghr-miR7485 mature miRNA
• Sequence: 11 - AAAGACAUCUUUGAAUUCUUGGAG - 34
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22138860
   A comparative miRNAome analysis reveals seven fiber initiation-related and 36 novel miRNAs in developing cotton ovules
   "Wang ZM, Xue W, Dong CJ, Jin LG, Bian SM, Wang C, Wu XY, Liu JY"
   "Mol Plant (2012) 5:889-900