Stem-loop ghr-MIR7487

Accession

MI0024171

Description

Gossypium hirsutum ghr-MIR7487 precursor miRNA

Sequence

agguuaauggguuacaaguauccuauaaaaguauaguaaaauauuaaaaaaauaaauuuuaaaaaaaaggaagacgcaugccaaauuuuaaaaaauguguggaauuuaaaaaaaaaacugcuaguguaccaaauacuaaccuuuaaaauuggacuaaaauuugagugaguauuugguacacuagcagaauguuuuuuuuuauuccacaagcaaccuuaaaaaguugucauaugucuucuucuuuuuaauauuuuacuAUACUCUUAUAGGACACUUGUUAAccccuaacuc
.(((((..(((((((((((.((((((((.(((((((((((((((((((((.................(((((((((.(((.(((.((((((......((((((((..(((((((...((((((((((((((((((((.((..(((((.((......)).))))))).))))))))))))))))))))....)))))))..)))))))).......))))))..))).))).))))))))).))))))))))))))))))))).)))))))).))))).)))))).))))).

Structure

a     au      -     a        a                     aauaaauuuuaaaaaaa         c   c   -a      -aaaaug        uu       -aaa                    a  cu     a  gg 
 gguua  ggguua caagu uccuauaa aguauaguaaaauauuaaaaa                 aggaagacg aug caa  uuuuaa       uguggaau  aaaaaaa    cugcuaguguaccaaauacu ac  uuaaa uu  a
 |||||  |||||| ||||| |||||||| |||||||||||||||||||||                 ||||||||| ||| |||  ||||||       ||||||||  |||||||    |||||||||||||||||||| ||  ||||| ||   
 ucaau  cccAAU GUUCA AGGAUAUU UCAUAucauuuuauaauuuuu                 uucuucugu uac guu  aaaauu       acaccuua  uuuuuuu    gacgaucacaugguuuauga ug  aguuu aa  c
c     -c      U     C        C                     ----------------c         a   u   ga      ccaacga        uu       guaa                    g  --     a  au 

Annotation confidence Not enough data

Genome context

Unknown

Mature ghr-miR7487

• Accession: MIMAT0029129
• Description: Gossypium hirsutum ghr-miR7487 mature miRNA
• Sequence: 258 - AUACUCUUAUAGGACACUUGUUAA - 281
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22138860
   A comparative miRNAome analysis reveals seven fiber initiation-related and 36 novel miRNAs in developing cotton ovules
   "Wang ZM, Xue W, Dong CJ, Jin LG, Bian SM, Wang C, Wu XY, Liu JY"
   "Mol Plant (2012) 5:889-900