miRBase entry: ghr-MIR7489

Stem-loop ghr-MIR7489


Accession
MI0024173
Description
Gossypium hirsutum ghr-MIR7489 precursor miRNA


Sequence

11336 reads, 663.0 reads per million, 50 experiments
ugguaugggcAUUGUUGCCAAUACAGGAGAACGUggbucuuuuugacauaaugccuagaacuacccauagcuccaucccaacUCAUAAAUAGGAGGAUAAgacugaauucacguccuccuauacugguaacaaugcgcaugccaa
(((((((.((((((((((((.....((((...((((.(((................))).))))......))))..............((((((((((..((......))..))))))))))..)))))))))))).))))))).

Structure
-       g            AUACAGGAGAACGUggbucuuuuugacauaaugccuagaacuacccauagcuccaucccaacUCAUAA          AA  cu 
 ugguaug gcAUUGUUGCCA                                                                    AUAGGAGGAU  ga  g
 ||||||| ||||||||||||                                                                    ||||||||||  ||   
 accguac cguaacaauggu                                                                    uauccuccug  cu  a
a       g            ------------------------------------------------------------------ca          ca  ua 


Annotation confidence Low
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature ghr-miR7489-5p

Accession MIMAT0029131
Description Gossypium hirsutum ghr-miR7489-5p mature miRNA
Sequence 11 - AUUGUUGCCAAUACAGGAGAACGU - 34
Evidence experimental
Illumina [1]

Mature ghr-miR7489-3p

Accession MIMAT0055318
Description Gossypium hirsutum ghr-miR7489-3p mature miRNA
Sequence 83 - UCAUAAAUAGGAGGAUAA - 100
Evidence experimental
unknown

References

  1. PubMed ID: 22138860
    A comparative miRNAome analysis reveals seven fiber initiation-related and 36 novel miRNAs in developing cotton ovules
    "Wang ZM, Xue W, Dong CJ, Jin LG, Bian SM, Wang C, Wu XY, Liu JY"
    "Mol Plant (2012) 5:889-900