Stem-loop ghr-MIR7490

Accession

MI0024174

Description

Gossypium hirsutum ghr-MIR7490 precursor miRNA

Literature search

1 open access papers mention ghr-MIR7490
(1 sentences)

Sequence

733 reads, 39.0 reads per million, 46 experiments

uuauuugauacacugcgguggagauuuuugacuccacaAGCAUAUUGAGGAUUUGGUAAAGUguauuauaugguguaguaaaaaauaaaaaaauuuauuauauaaauaaaugugagacuugucacacucuuaacacguuuguggAGUCUAGAAAACUUCACUGACGGUguaucaaaua
.((((((((((((((((((((((.(((((((((((((((((...((((((((((....))))..........((((((((((...........)))))))))).......(((((......))))).))))))...)))))))))))).))))).)))))))).))))))))))))))

Structure

u              -        a     -            AUA      -----------------------------------------------------------------    G 
 uauuugauacacug cgguggag uuuuu gacuccacaAGC   UUGAGG                                                                 AUUU G
 |||||||||||||| |||||||| ||||| ||||||||||||   ||||||                                                                 ||||  
 auaaacuaugUGGC GUCACUUC AAAGA CUGAgguguuug   aauucu                                                                 UGAA U
-              A        A     U            cac      cacacuguucagaguguaaauaaauauauuauuuaaaaaaauaaaaaaugaugugguauauuaug    A 

Annotation confidence Not enough data

Genome context

Unknown

Mature ghr-miR7490-5p

• Accession: MIMAT0055319
• Description: Gossypium hirsutum ghr-miR7490-5p mature miRNA
• Sequence: 39 - AGCAUAUUGAGGAUUUGGUAAAGU - 62
• Evidence: experimental ; unknown

Mature ghr-miR7490-3p

• Accession: MIMAT0029132
• Description: Gossypium hirsutum ghr-miR7490-3p mature miRNA
• Sequence: 145 - AGUCUAGAAAACUUCACUGACGGU - 168
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22138860
   A comparative miRNAome analysis reveals seven fiber initiation-related and 36 novel miRNAs in developing cotton ovules
   "Wang ZM, Xue W, Dong CJ, Jin LG, Bian SM, Wang C, Wu XY, Liu JY"
   "Mol Plant (2012) 5:889-900