Stem-loop ghr-MIR7492c

Accession

MI0024178

Description

Gossypium hirsutum ghr-MIR7492c precursor miRNA

Literature search

1 open access papers mention ghr-MIR7492c
(1 sentences)

Sequence

9969 reads, 456.0 reads per million, 50 experiments

gaaaaugccgCUAUAGAACAUGAUCUUUAGCGGcacuuucccuacaaacgucacuauagaacaugaucuuuagcgacacuuuuauuacaaacaccgcuaaggaacaugauuuuuagcgacguuuuuuuuacaaacgccgcaaaagagucgagcauguugugguguuuguaacuagaaucgccgcaAAAGAUCAUGUUCUUUAGCGGCauuuacg
..(((((((((((.((((((((((((((.(((((...........(((((((.(((.(((.((((.(((((((((...................))))))))).)))).))).))).)))))))...(((((((((((((((....((...))...)))))))))))))))........))))).)))))))))))))).)))))))))))...

Structure

-ga           U              A     --------------------------------------------acuuucccuac       a   u   a    a         acacuuuu 
   aaaugccgCUA AGAACAUGAUCUUU GCGGc                                                       aaacguc cua aga caug ucuuuagcg        a
   ||||||||||| |||||||||||||| |||||                                                       ||||||| ||| ||| |||| |||||||||        u
   uuuaCGGCGAU UCUUGUACUAGAAA cgccg                                                       uuugcag gau uuu guac aggaaucgc        u
gca           U              a     cuaagaucaauguuugugguguuguacgagcugagaaaacgccgcaaacauuuuu       c   u   a    a         cacaaaca 

Annotation confidence Low

Genome context

Unknown

Mature ghr-miR7492c-5p

• Accession: MIMAT0029136
• Description: Gossypium hirsutum ghr-miR7492c-5p mature miRNA
• Sequence: 11 - CUAUAGAACAUGAUCUUUAGCGG - 33
• Evidence: experimental ; Illumina [1]

Mature ghr-miR7492c-3p

• Accession: MIMAT0055323
• Description: Gossypium hirsutum ghr-miR7492c-3p mature miRNA
• Sequence: 186 - AAAGAUCAUGUUCUUUAGCGGC - 207
• Evidence: experimental ; unknown

References

1. PubMed ID: 22138860
   A comparative miRNAome analysis reveals seven fiber initiation-related and 36 novel miRNAs in developing cotton ovules
   "Wang ZM, Xue W, Dong CJ, Jin LG, Bian SM, Wang C, Wu XY, Liu JY"
   "Mol Plant (2012) 5:889-900