Stem-loop ghr-MIR160

Accession

MI0024179

Description

Gossypium hirsutum ghr-MIR160 precursor miRNA

Literature search

17 open access papers mention ghr-MIR160
(61 sentences)

Sequence

80359 reads, 4488.0 reads per million, 51 experiments

cauccauguauguaugUGCCUGGCUCCCUGUAUGCCAuuugcagagcccauugaacuucgauagccuccgugaauggcgUAUGAGGAGCCAUGCAUGUAUucuauguauu
....((((...((((((((.(((((((.((((((((((((((.(((.(.(((((...))))).).))).)))))))))))))).))))))).))))))))..))))....

Structure

cauc    uau        C       C              a   c c     a 
    caug   guaugUGC UGGCUCC UGUAUGCCAuuugc gag c auuga  
    ||||   |||||||| ||||||| |||||||||||||| ||| | ||||| c
    guau   UAUGUACG ACCGAGG GUAUgcgguaagug cuc g uagcu  
uuau    -cu        U       A              c   c a     u 

Annotation confidence Medium

Genome context

Unknown

Mature ghr-miR160-5p

• Accession: MIMAT0055324
• Description: Gossypium hirsutum ghr-miR160-5p mature miRNA
• Sequence: 17 - UGCCUGGCUCCCUGUAUGCCA - 37
• Evidence: experimental ; unknown

Mature ghr-miR160-3p

• Accession: MIMAT0029137
• Description: Gossypium hirsutum ghr-miR160-3p mature miRNA
• Sequence: 80 - UAUGAGGAGCCAUGCAUGUAU - 100
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22138860
   A comparative miRNAome analysis reveals seven fiber initiation-related and 36 novel miRNAs in developing cotton ovules
   "Wang ZM, Xue W, Dong CJ, Jin LG, Bian SM, Wang C, Wu XY, Liu JY"
   "Mol Plant (2012) 5:889-900