Stem-loop ghr-MIR7498

Accession

MI0024187

Description

Gossypium hirsutum ghr-MIR7498 precursor miRNA

Literature search

1 open access papers mention ghr-MIR7498
(1 sentences)

Sequence

523 reads, 22.0 reads per million, 43 experiments

gaccaauagcAUGGUGACACAUGGUAGUCUCACAuuuugacacauggcacuuuuaaaaauuuuuauuauuucaaguuucaaaauguuagccuaccACGUGUCACCAUGCUAUUGguug
((((((((((((((((((((.((((((.((.(((((((((.((.(((......((((....)))).....))).)).))))))))).)).)))))).)))))))))))))))))))).

Structure

-                    A      U  C         c  a   cacuuu    a 
 gaccaauagcAUGGUGACAC UGGUAG CU ACAuuuuga ac ugg      uaaa a
 |||||||||||||||||||| |||||| || ||||||||| || |||      ||||  
 uugGUUAUCGUACCACUGUG Accauc ga uguaaaacu ug acu      auuu u
g                    C      c  u         u  a   -uuauu    u 

Annotation confidence Medium

Genome context

Unknown

Mature ghr-miR7498-5p

• Accession: MIMAT0029145
• Description: Gossypium hirsutum ghr-miR7498-5p mature miRNA
• Sequence: 11 - AUGGUGACACAUGGUAGUCUCACA - 34
• Evidence: experimental ; Illumina [1]

Mature ghr-miR7498-3p

• Accession: MIMAT0055332
• Description: Gossypium hirsutum ghr-miR7498-3p mature miRNA
• Sequence: 96 - ACGUGUCACCAUGCUAUUG - 114
• Evidence: experimental ; unknown

References

1. PubMed ID: 22138860
   A comparative miRNAome analysis reveals seven fiber initiation-related and 36 novel miRNAs in developing cotton ovules
   "Wang ZM, Xue W, Dong CJ, Jin LG, Bian SM, Wang C, Wu XY, Liu JY"
   "Mol Plant (2012) 5:889-900