Stem-loop ghr-MIR7504a

Accession

MI0024193

Description

Gossypium hirsutum ghr-MIR7504a precursor miRNA

Literature search

3 open access papers mention ghr-MIR7504a
(6 sentences)

Sequence

6542 reads, 393.0 reads per million, 50 experiments

aauggacuugUAUGAAACUGUGAUUCCACGUCAUuuuuaucccuuuccuuuaggagaaugacaaaucagauuuuuccuacugaaaauaucuaaauccaauuaaaaaugcuauaaucaggaagaaaaauuugauuugucauucuccuaauaaaauggaauaggaacaacguggaAUCACAAUUUCAUACAAUCCuuu
...(((.((((((((((.(((((((((((((..(((((((.((......(((((((((((((((((((((((((((...((((..(((.(.................).)))..))))...)))))))))))))))))))))))))))......)).)))))))..))))))))))))).)))))))))))))...

Structure

aau   c          C             CA       c  uuuccu                           cua    aa   u uaaaucc 
   gga uugUAUGAAA UGUGAUUCCACGU  Uuuuuau cc      uuaggagaaugacaaaucagauuuuuc   cuga  aua c       a
   ||| |||||||||| |||||||||||||  ||||||| ||      |||||||||||||||||||||||||||   ||||  ||| |       a
   CCU AACAUACUUU ACACUAaggugca  aaggaua gg      aauccucuuacuguuuaguuuaaaaag   gacu  uau g       u
uuu   -          A             ac       a  uaaaau                           aag    aa   c uaaaaau 

Annotation confidence Low

Genome context

Unknown

Mature ghr-miR7504a-5p

• Accession: MIMAT0029151
• Description: Gossypium hirsutum ghr-miR7504a-5p mature miRNA
• Sequence: 11 - UAUGAAACUGUGAUUCCACGUCAU - 34
• Evidence: experimental ; Illumina [1]

Mature ghr-miR7504a-3p

• Accession: MIMAT0055336
• Description: Gossypium hirsutum ghr-miR7504a-3p mature miRNA
• Sequence: 174 - AUCACAAUUUCAUACAAUCC - 193
• Evidence: experimental ; unknown

References

1. PubMed ID: 22138860
   A comparative miRNAome analysis reveals seven fiber initiation-related and 36 novel miRNAs in developing cotton ovules
   "Wang ZM, Xue W, Dong CJ, Jin LG, Bian SM, Wang C, Wu XY, Liu JY"
   "Mol Plant (2012) 5:889-900