Stem-loop ghr-MIR7505

Accession

MI0024194

Description

Gossypium hirsutum ghr-MIR7505 precursor miRNA

Literature search

3 open access papers mention ghr-MIR7505
(4 sentences)

Sequence

49930 reads, 2628.0 reads per million, 51 experiments

uauuuacggcUUCAGAAACCAUCCCUUCCUUgcuuaauuuauggaaucuguaauauacagauugacgccccuugcaaGGAAGGAAUGGUUUCUGAAGCuuuagguaac
((((((.(((((((((((((((.((((((((((...........((((((((...))))))))..........)))))))))).))))))))))))))).))))))..

Structure

--      c               C          uuaauuuaugg        a 
  uauuua ggcUUCAGAAACCAU CCUUCCUUgc           aaucugua  
  |||||| ||||||||||||||| ||||||||||           |||||||| u
  auggau uCGAAGUCUUUGGUA GGAAGGaacg           uuagacau  
ca      u               A          -uuccccgcag        a 

Annotation confidence High

Genome context

Unknown

Mature ghr-miR7505-5p

• Accession: MIMAT0029152
• Description: Gossypium hirsutum ghr-miR7505-5p mature miRNA
• Sequence: 11 - UUCAGAAACCAUCCCUUCCUU - 31
• Evidence: experimental ; Illumina [1]

Mature ghr-miR7505-3p

• Accession: MIMAT0055337
• Description: Gossypium hirsutum ghr-miR7505-3p mature miRNA
• Sequence: 78 - GGAAGGAAUGGUUUCUGAAGC - 98
• Evidence: experimental ; unknown

References

1. PubMed ID: 22138860
   A comparative miRNAome analysis reveals seven fiber initiation-related and 36 novel miRNAs in developing cotton ovules
   "Wang ZM, Xue W, Dong CJ, Jin LG, Bian SM, Wang C, Wu XY, Liu JY"
   "Mol Plant (2012) 5:889-900