Stem-loop ghr-MIR7508

Accession

MI0024197

Description

Gossypium hirsutum ghr-MIR7508 precursor miRNA

Literature search

1 open access papers mention ghr-MIR7508
(2 sentences)

Sequence

191550 reads, 7834.0 reads per million, 51 experiments

uggcaggaagCAAGAAAAGAAGUCGGGAGAGaauuuucgaucgguucccuuuagcuucucaaaacuuauccgaaauccuUUCCCGGCUUCUUUUCUUGCUuucguuuaau
.(((.((((((((((((((((((((((((((.(((((.(((.((((................)))).))).))))).)))))))))))))))))))))))))))))....

Structure

---u   a                          a     c   c    cccuuua 
    ggc ggaagCAAGAAAAGAAGUCGGGAGAG auuuu gau gguu       g
    ||| |||||||||||||||||||||||||| ||||| ||| ||||        
    uug cuuUCGUUCUUUUCUUCGGCCCUUuc uaaag cua ucaa       c
uaau   -                          c     c   u    aacucuu 

Annotation confidence High

Genome context

Unknown

Mature ghr-miR7508-5p

• Accession: MIMAT0029155
• Description: Gossypium hirsutum ghr-miR7508-5p mature miRNA
• Sequence: 11 - CAAGAAAAGAAGUCGGGAGAG - 31
• Evidence: experimental ; Illumina [1]

Mature ghr-miR7508-3p

• Accession: MIMAT0055338
• Description: Gossypium hirsutum ghr-miR7508-3p mature miRNA
• Sequence: 80 - UUCCCGGCUUCUUUUCUUGCU - 100
• Evidence: experimental ; unknown

References

1. PubMed ID: 22138860
   A comparative miRNAome analysis reveals seven fiber initiation-related and 36 novel miRNAs in developing cotton ovules
   "Wang ZM, Xue W, Dong CJ, Jin LG, Bian SM, Wang C, Wu XY, Liu JY"
   "Mol Plant (2012) 5:889-900