Stem-loop ghr-MIR169b

Accession

MI0024199

Description

Gossypium hirsutum ghr-MIR169b precursor miRNA

Literature search

11 open access papers mention ghr-MIR169b
(21 sentences)

Sequence

1126 reads, 47.0 reads per million, 44 experiments

uaaaguagugCAGCCAAGGAUGAUUUGCCGGcuaggcuuucucuuccacuuaucugaguuguuuuuugauacucguuaauuacucaaaacuauuuauguuaaugguuugaacuguucaugggaacgggaaguuaauuauuuaauacauaaaugaaucaaaccuuuguuggaggagauaaUCGGCAAGUUGUCUUUGGCUacguuucuuuc
.((((.((((.((((((((((((((((((((.((.....(((((((((......(((((.(((...(((...)))..))).))))).(((.......)))...(((((((.((((((....))))))........(((((((.....))))))).))))))).....))))))))))).)))))))))))))))))))).)))).)))).

Structure

u    u    C                    c  ggcuu         ---------------------------------------------------------------------------cuuauc     u   uuu   u 
 aaag agug AGCCAAGGAUGAUUUGCCGG ua     ucucuucca                                                                                 ugagu guu   uga  
 |||| |||| |||||||||||||||||||| ||     |||||||||                                                                                 ||||| |||   ||| a
 uuuc uugc UCGGUUUCUGUUGAACGGCU au     agaggaggu                                                                                 acuca uaa   gcu  
c    u    a                    a  -----         uguuuccaaacuaaguaaauacauaauuuauuaauugaagggcaaggguacuugucaaguuugguaauuguauuuaucaaa     u   -uu   c 

Annotation confidence Medium

Genome context

Unknown

Mature ghr-miR169b-5p

• Accession: MIMAT0029157
• Description: Gossypium hirsutum ghr-miR169b-5p mature miRNA
• Sequence: 11 - CAGCCAAGGAUGAUUUGCCGG - 31
• Evidence: experimental ; Illumina [1]

Mature ghr-miR169b-3p

• Accession: MIMAT0055340
• Description: Gossypium hirsutum ghr-miR169b-3p mature miRNA
• Sequence: 180 - UCGGCAAGUUGUCUUUGGCU - 199
• Evidence: experimental ; unknown

References

1. PubMed ID: 22138860
   A comparative miRNAome analysis reveals seven fiber initiation-related and 36 novel miRNAs in developing cotton ovules
   "Wang ZM, Xue W, Dong CJ, Jin LG, Bian SM, Wang C, Wu XY, Liu JY"
   "Mol Plant (2012) 5:889-900